Publications¶
Also see my ORCID 0000-0002-2648-4790 or my HAL CV.
Journal articles¶
Denis Alevi, Marcel Stimberg, Henning Sprekeler, Klaus Obermayer, and Moritz Augustin. Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs. Frontiers in Neuroinformatics, 2022. doi:10.3389/fninf.2022.883700, source code.
Romain D. Cazé and Marcel Stimberg. Neurons with dendrites can perform linearly separable computations with low resolution synaptic weights [version 3; peer review: 3 approved]. F1000Research, April 2021. doi:10.12688/f1000research.26486.3, source code.
Marcel Stimberg, Dan F. M. Goodman, and Thomas Nowotny. Brian2GeNN: accelerating spiking neural network simulations with graphics hardware. Sci Rep, 10:410, January 2020. doi:10.1038/s41598-019-54957-7, source code.
Marcel Stimberg, Romain Brette, and Dan FM Goodman. Brian 2, an intuitive and efficient neural simulator. eLife, 8:e47314, August 2019. doi:10.7554/eLife.47314, source code.
Pierre Yger, Giulia LB Spampinato, Elric Esposito, Baptiste Lefebvre, Stéphane Deny, Christophe Gardella, Marcel Stimberg, Florian Jetter, Guenther Zeck, Serge Picaud, Jens Duebel, and Olivier Marre. A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo. eLife, 7:e34518, mar 2018. doi:10.7554/eLife.34518, source code.
Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael Hines, Michael W. Hopkins, Pramod Kumbhar, David R. Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel Stimberg, Alan Barry Stokes, Adam Tomkins, Guido Trensch, Marmaduke Woodman, and Jochen Martin Eppler. Code generation in computational neuroscience: a review of tools and techniques. Front. Neuroinform., 2018. doi:10.3389/fninf.2018.00068.
Romain Cazé, Marcel Stimberg, and Benoît Girard. [Re] non-additive coupling enables propagation of synchronous spiking activity in purely random networks. ReScience, 2018. doi:10.5281/zenodo.1246659.
Nicolas P Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena Barba, Fabien CY Benureau, C Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P Davison, Marc Andr'e Delsuc, Georgios Detorakis, Alexandra K Diem, Damien Drix, Pierre Enel, Beno^it Girard, Olivia Guest, Matt G Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L Petchey, Hans Ekkehard Plesser, Timoth'ee Poisot, Karthik Ram, Yoav Ram, Etienne Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Joseph Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya Vostinar, Roman Yurchak, and Tiziano Zito. Sustainable computational science: the ReScience initiative. PeerJ Computer Science, 3:e142, 2017. doi:10.7717/peerj-cs.142.
Pierre Yger, Marcel Stimberg, and Romain Brette. Fast learning with weak synaptic plasticity. The Journal of Neuroscience, 35(39):13351–13362, 2015. doi:10.1523/JNEUROSCI.0607-15.2015.
Marcel Stimberg, Dan F. M. Goodman, Victor Benichoux, and Romain Brette. Equation-oriented specification of neural models for simulations. Frontiers in Neuroinformatics, 2014. doi:10.3389/fninf.2014.00006.
Marcel Stimberg, Klaus Wimmer, Robert Martin, Lars Schwabe, Jorge Mariño, James Schummers, David C Lyon, Mriganka Sur, and Klaus Obermayer. The operating regime of local computations in primary visual cortex. Cereb Cortex, 19(9):2166–2180, Sep 2009. doi:10.1093/cercor/bhn240.
James Schummers, Beau Cronin, Klaus Wimmer, Marcel Stimberg, Robert Martin, Klaus Obermayer, Konrad P. Koerding, and Mriganka Sur. Dynamics of orientation tuning in cat V1 neurons depend on location within layers and orientation maps. Frontiers in Neuroscience, 1:145–159, November 2007. doi:doi:10.3389/neuro.01.1.1.011.2007.
Book chapters¶
Marcel Stimberg, Dan F. M. Goodman, Romain Brette, and Maurizio De Pittà. Modeling Neuron–Glia Interactions with the Brian 2 Simulator. In Maurizio De Pittà and Hugues Berry, editors, Computational Glioscience, Springer Series in Computational Neuroscience, pages 471–505. Springer International Publishing, 2019. doi:10.1007/978-3-030-00817-8_18, preprint: https://doi.org/10.1101/198366, source code.
Conference proceedings¶
Robert Martin, Marcel Stimberg, Klaus Wimmer, and Klaus Obermayer. On the operating point of cortical computation. In Journal of Physics: Conference Series, volume 233, 012020. 2010. doi:10.1088/1742-6596/233/1/012020.
Klaus Wimmer, Marcel Stimberg, Robert Martin, Lars Schwabe, Jorge Mariño, James Schummers, David C. Lyon, Mriganka Sur, and Klaus Obermayer. Dependence of orientation tuning on recurrent excitation and inhibition in a network model of V1. In D. Koller, D. Schuurmans, Y. Bengio, and L. Bottou, editors, Advances in Neural Information Processing Systems 21, 1769–1776. MIT Press, 2009. URL: https://proceedings.neurips.cc/paper_files/paper/2008/hash/a5e00132373a7031000fd987a3c9f87b-Abstract.html.
PhD thesis¶
Marcel Stimberg. Computational models of contrast and orientation processing in primary visual cortex. PhD thesis, Technische Universität Berlin, Fakultät IV - Elektrotechnik und Informatik, 2011. doi:10.14279/depositonce-2961.