Publications

Journal articles

Alevi, Denis, Marcel Stimberg, Henning Sprekeler, Klaus Obermayer, and Moritz Augustin. Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs Frontiers in Neuroinformatics 16(2022). url: www.frontiersin.org/articles/10.3389/fninf.2022.883700
Cazé, Romain D. and Marcel Stimberg. Neurons with dendrites can perform linearly separable computations with low resolution synaptic weights [version 3; peer review: 3 approved] F1000Research, no. 9:1174 (April 2021). doi: 10.12688/f1000research.26486.3 url: f1000research.com/articles/9-1174
Stimberg, Marcel, Dan F. M. Goodman, and Thomas Nowotny. Brian2GeNN: accelerating spiking neural network simulations with graphics hardware Sci Rep 10(January 2020): 410. doi: 10.1038/s41598-019-54957-7 pdf: www.nature.com/articles/s41598-019-54957-7.pdf
Stimberg, Marcel, Romain Brette, and Dan FM Goodman. Brian 2, an intuitive and efficient neural simulator eLife 8(August 2019): e47314. doi: 10.7554/eLife.47314 url: doi.org/10.7554/eLife.47314
Yger, Pierre, Giulia LB Spampinato, Elric Esposito, Baptiste Lefebvre, Stéphane Deny, Christophe Gardella, Marcel Stimberg, Florian Jetter, et al, . A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo eLife 7(mar 2018): e34518. doi: 10.7554/eLife.34518
Blundell, Inga, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz Pier, Carlos Fernandez Musoles…, Marcel Stimberg, …, et al, . Code generation in computational neuroscience: a review of tools and techniques Front. Neuroinform. 12(2018). doi: 10.3389/fninf.2018.00068 url: www.frontiersin.org/articles/10.3389/fninf.2018.00068/abstract
Cazé, Romain, Marcel Stimberg, and Benoît Girard. [Re] Non-additive coupling enables propagation of synchronous spiking activity in purely random networks ReScience 4, no. 1 (2018). doi: 10.5281/zenodo.1246659 pdf: github.com/ReScience-Archives/Caze-Stimberg-Girard-2018/blob/master/article/Caze_2018.pdf
Rougier, Nicolas P, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena Barba, Fabien CY Benureau, C Titus Brown, Pierre de Buyl…, Marcel Stimberg, …, et al, . Sustainable computational science: the ReScience initiative PeerJ Computer Science 3(2017): e142. doi: 10.7717/peerj-cs.142
Yger, Pierre, Marcel Stimberg, and Romain Brette. Fast Learning with Weak Synaptic Plasticity The Journal of Neuroscience 35, no. 39 (2015): 13351–13362. doi: 10.1523/JNEUROSCI.0607-15.2015
Stimberg, Marcel, Dan F. M. Goodman, Victor Benichoux, and Romain Brette. Equation-oriented specification of neural models for simulations Frontiers in Neuroinformatics 8(2014). doi: 10.3389/fninf.2014.00006
Stimberg, Marcel, Klaus Wimmer, Robert Martin, Lars Schwabe, Jorge Mariño, James Schummers, David C Lyon, Mriganka Sur, et al. The operating regime of local computations in primary visual cortex. Cereb Cortex 19, no. 9 (Sep 2009): 2166–2180. doi: 10.1093/cercor/bhn240
Schummers, James, Beau Cronin, Klaus Wimmer, Marcel Stimberg, Robert Martin, Klaus Obermayer, Konrad P. Koerding, and Mriganka Sur. Dynamics of orientation tuning in cat V1 neurons depend on location within layers and orientation maps Frontiers in Neuroscience 1(November 2007): 145–159. doi: doi:10.3389/neuro.01.1.1.011.2007

Book chapters

Stimberg, Marcel, Dan F. M. Goodman, Romain Brette, and Maurizio De Pittà (2018). Modeling neuron--glia interactions with the Brian 2 simulator. In Computational Glioscience . pdf: www.biorxiv.org/content/early/2017/10/05/198366.full.pdf

Conference proceedings

Martin, Robert, Marcel Stimberg, Klaus Wimmer, and Klaus Obermayer (2010). On the Operating Point of Cortical Computation. In Journal of Physics: Conference Series , 012020. url: iopscience.iop.org/1742-6596/233/1/012020/
Wimmer, Klaus, Marcel Stimberg, Robert Martin, Lars Schwabe, Jorge Mariño, James Schummers, David C. Lyon, Mriganka Sur, et al (2009). Dependence of Orientation Tuning on Recurrent Excitation and Inhibition in a Network Model of V1. In Advances in Neural Information Processing Systems 21 , 1769–1776. pdf: books.nips.cc/papers/files/nips21/NIPS2008_0146.pdf

PhD thesis

Stimberg, Marcel (2011). Computational models of contrast and orientation processing in primary visual cortex. . doi: 10.14279/depositonce-2961